Question: Using NCBI's genomic accession to directly load GRanges in R
gravatar for guedes.aureliano
11 months ago by
guedes.aureliano0 wrote:

Hi all,

I have a simple question I'm having some difficulty to handle with.

I would like to load some genomes in a GRange object (GenomicRanges package) to use the GeneNeighborhood package.

The problem is, I don't know too much the BioConductor packages and I didn't find a solution to load genomic annotations based on NCBI genomic accessions.

I simply would like to give an NCBI genomic accession as argument (eg: "CP009910.1") and get a GRanges object.

Any help is appreciated. Thanks

granges R ncbi • 255 views
ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 11 months ago by guedes.aureliano0
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