Question: Using NCBI's genomic accession to directly load GRanges in R
0
gravatar for guedes.aureliano
11 months ago by
guedes.aureliano0 wrote:

Hi all,

I have a simple question I'm having some difficulty to handle with.

I would like to load some genomes in a GRange object (GenomicRanges package) to use the GeneNeighborhood package.

The problem is, I don't know too much the BioConductor packages and I didn't find a solution to load genomic annotations based on NCBI genomic accessions.

I simply would like to give an NCBI genomic accession as argument (eg: "CP009910.1") and get a GRanges object.

Any help is appreciated. Thanks

granges R ncbi • 255 views
ADD COMMENTlink modified 11 months ago by Biostar ♦♦ 20 • written 11 months ago by guedes.aureliano0
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 979 users visited in the last hour