Using NCBI's genomic accession to directly load GRanges in R
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4.7 years ago

Hi all,

I have a simple question I'm having some difficulty to handle with.

I would like to load some genomes in a GRange object (GenomicRanges package) to use the GeneNeighborhood package.

The problem is, I don't know too much the BioConductor packages and I didn't find a solution to load genomic annotations based on NCBI genomic accessions.

I simply would like to give an NCBI genomic accession as argument (eg: "CP009910.1") and get a GRanges object.

Any help is appreciated. Thanks

granges ncbi R • 745 views
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