Question

Any paternity testing tutorial?

0

Entering edit mode

6.1 years ago

konigfq • 0

Hello, i m a beginner in bioinformatics and planning to write a program for paternity testing.

I download 3 vcf files, one should be child and the other two should be parents (don't know which is father). Can I pick out some SNPs efficiently (for example, r^2 < 0.2) for 3 of them at the same time?

Is any tutorial or online course you could recommend? I really need it. Thanks~

paternity • 1.2k views

ADD COMMENT • link updated 6.1 years ago by WouterDeCoster 48k • written 6.1 years ago by konigfq • 0

score 1 · Answer 1 · 2019-08-27

1

Entering edit mode

6.1 years ago

WouterDeCoster 48k

I'm not sure if it's worth it to write another tool for this, as things like peddy already exist: https://github.com/brentp/peddy

ADD COMMENT • link 6.1 years ago by WouterDeCoster 48k

0

Entering edit mode

it looks great thank you! Do you know where can I download some data for practice?

ADD REPLY • link 6.1 years ago by konigfq • 0

0

Entering edit mode

what about the 3 VCF files you mention in your original question?

ADD REPLY • link 6.1 years ago by Friederike 9.0k