Question: Retrieving similarity of Interpro domains
gravatar for Damianos P. Melidis
13 months ago by
Germany/Hannover/Leibniz University Hannover
Damianos P. Melidis30 wrote:

Dear all,

I would like to ask for meta-data to assess similarity of Interpro domains.

I have checked the ParentChildTreeFile.txt, the type description (repeat,domain,etc) (file: entry.list.tsv) and the gene ontology annotation (GO) for each domain. However I am not sure if this metadata are enough.

For example may a domain is a child of a parent domain in the ParentChildTreeFile but it has a distinct function to the parent. Also the GO annotation for domains is based on the GO annotation of proteins so the cellular component for a domain how much biological information contains? To this end, I would like to ask if there is any other knowledge for the interpro domains such a phylogenetic tree? In order to have the similarity of the domains.

Many thanks!


meta-data interpro • 197 views
ADD COMMENTlink written 13 months ago by Damianos P. Melidis30
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