Question: Imputation of X chromosome non-PAR for male subjects
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gravatar for Apprentice
13 months ago by
Apprentice40
Apprentice40 wrote:

Hi.

I did an imputation of X chromosome SNPs for male subjects by using Minimac3.

I got a vcf file of the imputed SNPs. The males on the non-pseudoautosomal part of the X chromosome were coded as 0 or 1. However, I hope that males on the non-pseudoautosomal part of the X chromosome were coded as 0 or 2 (all genotypes as diploid homozygotes).

Could you how to do it?

x chromsoome snp imputation • 296 views
ADD COMMENTlink written 13 months ago by Apprentice40
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