In most cell line experiments, it is widespread to perform RNA-seq for many cell-lines before or after a treatment (of a drug). Then, typically, differential expression analysis is conducted.
Now if I have a pre-treatment expression of a new cell-line, how to determine what will be its likely (the drug) post-treatment expression? Assume drug efficacy and response are the same across all cell lines.
Any reference/paper that might have used such an approach?