Error: could not find function "assay"and "assays "
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Entering edit mode
18 months ago
ybling2008 • 0

I am doing the pipeline according toturial.

library(TCGAbiolinks)
library(SummarizedExperiment)
query = GDCquery(project = "TCGA-COAD", data.category = "Transcriptome Profiling", data.type = "miRNA Expression Quantification")          
GDCdownload(query)
 dataAssy2 = GDCprepare(query)
 expmatrix <- TCGAanalyze_Preprocessing(dataAssy2)

It comes an error:

Error in (function (classes, fdef, mtable) : unable to find an inherited method for function ‘assays’ for signature ‘"data.frame"’

May be some errors in my code ?

R RNA-Seq software error • 823 views
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