Question: Ensembl IDs as input in ReactomePA package in R
2
gravatar for sainikeshav6
10 months ago by
sainikeshav620
sainikeshav620 wrote:

Hi, I have list of differential expressed genes with gene names and ensembl IDs. On putting ensembl IDs as input in enrichPathway command doesn't work. Therefore, I converted ensembl IDs to entrez gene IDs using bioMart. This way some IDs were not converted. Also, the same ensembl ID gave 2 or more entrez ID leading to confusion. Is there a way to run enrichPathway command using ensembl IDs so that my all genes are included for further analysis.

reactomepa R • 346 views
ADD COMMENTlink written 10 months ago by sainikeshav620

Same issue here. It's not possible to perform enrichment pathway analysis on Reactome db with Ensembl ids on R?

ADD REPLYlink written 8 months ago by juanlutrinki0
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