Question: Ensembl IDs as input in ReactomePA package in R
2
gravatar for sainikeshav6
3 months ago by
sainikeshav620
sainikeshav620 wrote:

Hi, I have list of differential expressed genes with gene names and ensembl IDs. On putting ensembl IDs as input in enrichPathway command doesn't work. Therefore, I converted ensembl IDs to entrez gene IDs using bioMart. This way some IDs were not converted. Also, the same ensembl ID gave 2 or more entrez ID leading to confusion. Is there a way to run enrichPathway command using ensembl IDs so that my all genes are included for further analysis.

reactomepa R • 207 views
ADD COMMENTlink written 3 months ago by sainikeshav620

Same issue here. It's not possible to perform enrichment pathway analysis on Reactome db with Ensembl ids on R?

ADD REPLYlink written 6 weeks ago by juanlutrinki0
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