DNA-Methylation downstream analysis using deepTOOLS or bedops

Question

[sc@791]

Hi!

Is it possible to plot DNA-methylation (bigwig file) around various genomic regions (promoter, gene-body, 5' and 3' UTRs) of Arabidopsis using any tool such as deepTools or BEDOPS or anyother? If yes, how, which file of genomic regions should I take, and in what format? I'll appreciate any help?

Thank you! Best

Answer 1

[Rashedul Islam]

Yes, it is possible. Please look at the example codes here: https://deeptools.readthedocs.io/en/develop/content/tools/plotProfile.html

You can provide bed files for genomic regions.