Question: Genotype frequency from ped or vcf files
1
Ale Lope • 10 wrote:
Hello All,
I would like to get the genotype frequency at each SNP for a specific cohort. I have 2,000 patients divided into three different diseases, so I would like to reproduce the next output (as an example) per each cohort:
AA AT TT CC CG GG
SNP1 .6 .3 .1 - - -
SNP2 - - - .2 .5 .3
SNP3 - - - .4 .4 .2
:
SNPN .6 .3 .1 - - -
I have .ped and vcf files format
Hopefully someone can give me a hint!
Thanks,
Ale
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modified 16 months ago
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chrchang523 ♦ 7.7k
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16 months ago by
Ale Lope • 10