Entering edit mode
4.5 years ago
Hi while I enter data into R for WGCNA analysis and use the goodsamplesgenes function,it shows something like
gsg = goodSamplesGenes(datExpr0, verbose = 3); Flagging genes and samples with too many missing values... ..step 1 Error in goodGenes(datExpr, weights, goodSamples, goodGenes, minFraction = minFraction, : datExpr must contain numeric data.
my column names are [1] "logFC" "AveExpr" "t"
[4] "P.Value" "adj.P.Val" "B"
[7] "gene.symbols" "X"
Btw this input is actually a list of DEGs that i got from R by analysing 4 sets of microarray data for prostate cancer from $ diff DEGs.Can someone help me if my input matrix is ok or should I change
