Question: Categorizing prokka outputs
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gravatar for biobiu
3 months ago by
biobiu110
United States
biobiu110 wrote:

I've annotated assembled bins using prokka. Now I want to cluster the genes by function, pathways etc. I thought to categorize enzymes by ec number. Any recommendations on how to do that for non-enzymatic protein coding genes?

gene • 93 views
ADD COMMENTlink written 3 months ago by biobiu110

You could blast those genes to find a homolog with an EC number and use that in your analysis. You could also use gene ontology (GO) or clusters of orthologous (COG) analysis to cluster genes/proteins into functions.

ADD REPLYlink written 3 months ago by Amar640
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