Question: admixture CV error K keep decreasing
gravatar for Runen
8 weeks ago by
Runen10 wrote:

Hi, all

        I've been having some problems lately, When I run with the following script. I just get a bunch of decreasing K values, which makes it impossible for me to choose the optimal grouping number.

my script: for K in 1 2 3 4 5 6 7;do /data3/liurb/tools/admixture_linux-1.3.0/admixture_linux-1.3.0/admixture --cv 项目.bed $K|tee log${K}.out;done

Results: CV error (K=1): 0.85750 CV error (K=2): 0.80467 CV error (K=3): 0.78294 CV error (K=4): 0.76444 CV error (K=5): 0.75725 CV error (K=6): 0.73499 CV error (K=7): 0.72988

It looks like there is something wrong, but I ca n’t find it, I hope everyone helps. Thanks.

ADD COMMENTlink written 8 weeks ago by Runen10
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