Question: admixture CV error K keep decreasing
0
gravatar for Runen
8 weeks ago by
Runen10
CN
Runen10 wrote:

Hi, all

        I've been having some problems lately, When I run with the following script. I just get a bunch of decreasing K values, which makes it impossible for me to choose the optimal grouping number.

my script: for K in 1 2 3 4 5 6 7;do /data3/liurb/tools/admixture_linux-1.3.0/admixture_linux-1.3.0/admixture --cv 项目.bed $K|tee log${K}.out;done

Results: CV error (K=1): 0.85750 CV error (K=2): 0.80467 CV error (K=3): 0.78294 CV error (K=4): 0.76444 CV error (K=5): 0.75725 CV error (K=6): 0.73499 CV error (K=7): 0.72988

It looks like there is something wrong, but I ca n’t find it, I hope everyone helps. Thanks.

ADD COMMENTlink written 8 weeks ago by Runen10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1469 users visited in the last hour