I was wondering if PANTHER would be a good tool to use if I were interested in looking at a specific class of proteins in a transcriptome.
I think that single-sentence questions are in general not providing enough information to be useful. Single-sentence answers as well, which is why I suggest that you elaborate on your particular problem.
I have a transcriptome that has been assembled and annotated. my next step is so look at a particular set of genes (gustatory). How am I able to do that after the annotation step has been completed?