Entering edit mode

16 months ago

mostafarafiepour
▴
110

Hi Dear all,

I have a table of SNPs with alleles in any position (alleles A1 and A2) (As you can see in the table below). So, I want to calculate the Fst for each position. I can only calculate Fct for the VCF file but I have no idea about it.

What is the best idea?

```
SNP Chr Position A1 A2
AX-85070764 0 52193 G A
AX-85125208 0 76511 A G
AX-85102691 0 97615 G T
AX-85160125 0 116502 C A
AX-85127001 0 254208 C T
AX-85119002 0 307773 A G
AX-85069970 0 372522 T C
AX-85059862 0 464239 T C
AX-85112924 0 496560 G A
AX-85104270 0 738126 G A
AX-85091977 0 911657 A G
AX-85058183 0 949512 A G
AX-85078603 0 984527 T C
```