Question: Common bioinformatics tools required to analyze the mutational distribution in mice genomes
0
gravatar for banerjeeshayantan
11 months ago by
banerjeeshayantan190 wrote:

I have 21 normal-tumour matched whole-genome sequencing data from isogenic mice samples. I intend to perform the following:

  1. Distribution of substitutions, indels, rearrangements and copy number changes across samples.
  2. Mutational signature analysis of the samples.

I am aware of tools such as SIFT, VEP etc that can take care of the distribution of substitutions. But can you suggest me some tools for the other analyses? (indels, rearranagements, copy number changes and mutational signature analysis)

next-gen genome • 175 views
ADD COMMENTlink modified 11 months ago • written 11 months ago by banerjeeshayantan190
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1861 users visited in the last hour