Trouble installing mapper.pl from mirdeep2
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4.3 years ago
jomagrax ▴ 40

Hi everyone Im triyng to install mirdeep2 in ubuntu, both with conda and from source code (following this tutorial)

miRDeep2.pl works fine but for mapper.pl and quantifier.pl I get the following error message

Please run the install.pl script first before using the miRDeep2 package
The install script is located in /home/superuser/CAP-miRSEQ/build/mirdeep2_patch-mas so just do

cd /home/superuser/CAP-miRSEQ/build/mirdeep2_patch-mas
perl install.pl

Does any one have some idea?

Thanks in advance, Jose

mirdeep2 RNA-Seq cap-mirseq • 1.8k views
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Entering edit mode
4.3 years ago
jomagrax ▴ 40

As explained here If installing from conda just type

touch ~/.conda/envs/mirdeep2/install_successful
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