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12.0 years ago
Jirapong
▴
20
I have a very strange behavior of tophat v1.2.0 tool where it generate a blank sequence name on the stub_header.sam file.
@HD VN:1.0 SO:sorted
@SQ SN: LN:29893408
@SQ SN: LN:15549267
@SQ SN: LN:13234341
@SQ SN: LN:12718334
@SQ SN: LN:12965953
@SQ SN: LN:14726556
@SQ SN: LN:11902654
@SQ SN: LN:10288499
@SQ SN: LN:10253655
@SQ SN: LN:10167229
@SQ SN: LN:7207165
@SQ SN:Group5 LN:14363272
@SQ SN:Group6 LN:18472937
@SQ SN:Group7 LN:13219345
@SQ SN:Group8 LN:13546544
@SQ SN:Group9 LN:11120453
Is there away to identify if this issue come from gff file or the fastq file?
