Off topic:Best variant caller for oxford nanopore
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14 months ago

Hello everyone, I just started sequencing with oxford nanopore and now have a question regarding variant callers. After mapping my data to a reference, I now want to do variant calling for structural variants and also for SNPs, but since there are so many options to choose from, I would like to get some advice on which callers are the best. Maybe I should also mention that I'm working with diploid organisms and am especially interested in the different genotypes across the whole genome.

sequencing snp • 505 views
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