Is there a list of the ligand functions?

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4.2 years ago

fann • 0

Hello,

I would like to have information regarding the relevance of some ligands in structures extracted from the PDB. Could be nice to found something like this: PDB_ID Ligand_3letters_ID functions(solvent, cofactor, ion, inhibitor, chelator, etc)
Does anyone know where I can find this kind of information?

Thanks!

data pdb ligand • 613 views

ADD COMMENT • link 4.2 years ago by fann • 0

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You may need to do some programming on your own, but this may help:

https://www.ncbi.nlm.nih.gov/pubmed/30759194

https://www.ebi.ac.uk/pdbe/pdbe-rest-api

ADD REPLY • link 4.2 years ago by Mensur Dlakic ★ 27k

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Can you provide some examples?

ADD REPLY • link 4.2 years ago by GenoMax 142k

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Ideally, something like this:

1DS1 A SO4 solvent,counter-ion

1DS1 A AKG solvent,counter-ion

1DS1 A PGO solvent

1DS1 A FE2 ion

PDB_ID chain_ID 3Letters_ID description

ADD REPLY • link 4.2 years ago by fann • 0

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