Hi, We are trying to run an SNP Analysis on Mtb whole genome. Currently, we are stuck at the Base Recalibration Step. It says that we require a DbSNP file to generate the BQSR.table for Applying BQSR. The DbSNP file for Mycobacterium tuberculosis does not exist.
Any advice on how to move forward with the Base Recalibration without the DBSNP would be greatly appreciated. Thanks!