Similar posts • Search »

• Downloading Superimposed Pdb Files With Ligand..
  I am trying to superimpose a protein structure having a ligand with another protein molecule. I...
• About Energy minimization by Gromacs web server
  Recently I visualize the mutant protein model by Swiss-PDB viewer and download its pdb file. Now ...
• Homology modelling Swiss PDB Viewer error
  Hi, I'm using the Swiss PDB Viewer to create a homology model for our protein. I'm following the ...
• Effect of amino acid mutation (deletion) on the protein structure
  I have a wild-type amino acid sequence of a plant. I have a mutated sequence with a single amino ...
• 3D Protein Modelling
  Dear all, I'm looking for a tutorial/book/document for learning intermediate and advanced tips i...
• evaluating the effect of mutation in binding affinity of two proteins
  Hi, I used Swiss pdb viewer to mutate three polar amino acids in the contact surface of two prot...
• Making mutant protein models using Swiss-PDB viwer
  How do I create a mutant model of a protein using the Swiss-PDB deep view? I can see there's an o...
• Looking for a pdb file of HIV-1 Protease without any inhibitors or substrate
  I'm looking for a pdb file of HIV-1 protease without any inhibitors or substrates. So that when I...
• possible method to draw a 3D structure by PDB or Blast or swiss model
  I think Homology modeling predicts the 3D structure compared to protein threading, but I do have ...
• Energy minimization for protein model refinement
  Hi. Im Beginner in Bioinformatics. Need an opinion from Professional. Recently i am doing my proj...
• How To Make Multiple Fasta-->Pdb Conversions For Short Peptides (4 Or 5 Aminoacid Long)
  Hi, I would like to perform a virtual screening for tetramers on a protein of interest. For this ...
• Fasta to PDB
  I am new comer.I have a fasta sequence of a protein urease A from a south asian strain but i can'...
• Protein PDB ID
  I have the uniprot accession number for a couple of proteins and I would like to get their PDB Id...
• Why Residues are Missing In This Protein Structure?
  when i am open my protein(eg-1cqe) in swiiss pdb viewer ,it show some aminoacids side chains are ...
• Is it a good idea to proceed with incomplete protein model?
  I am trying to model a protein of length 438aa. It has ~88% identity and ~80% query coverage wit...
• Yasara Help- Saving Energy Minized Model As Pdb File
  Hi all, For my homology model protein, I have done energy minimization through YASARA energy mi...