compare genotype data to rnaseq for true rna editing events
0
0
Entering edit mode
2.6 years ago
biotechdiya ▴ 30

Hi,

I have genotype data and rna seq data. I have identified editing events from rna seq data but we want to make sure these are true events and not snps for which we would like to take advantage of our genotyping data. How can i compare these both data sets? Are there any tools that do these kind of comparisons, or should i be making a custom script to look at each rna edited position genomic coordinates and find the same in genotype (plink) data,

Thanks,

RNA-Seq SNP • 381 views
ADD COMMENT

Login before adding your answer.

Traffic: 1022 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6