Can you use salmon bootstraps to increase sample size for machine learning
1
0
Entering edit mode
4.0 years ago
yryan ▴ 10

Hi folks,

I've got some time course matched RNA seq experiments with n=6 for controls and exposures. I'm trying to do some machine learning classification with these. I'm wondering if using the bootstraps generated by salmon is a valid way of increasing my sample size or is this not really suitable?

RNA-Seq salmon machine learning • 741 views
ADD COMMENT
1
Entering edit mode
4.0 years ago
ATpoint 82k

No, it is not. These are uncertainty estimates, not replicates.

ADD COMMENT
0
Entering edit mode

Okay, thanks! (making up characters to comment)

ADD REPLY

Login before adding your answer.

Traffic: 2506 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6