Question

how to remove bedpe deplication

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5.5 years ago

liulinli17m • 0

hi I want to remove duplication in bedpe the format like this : chr start end chr start end how to remove overlap in this bedpe file? thanks

ChIP-Seq hic • 1.1k views

ADD COMMENT • link updated 5.5 years ago by ATpoint 89k • written 5.5 years ago by liulinli17m • 0

score 1 · Answer 1 · 2020-05-01

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5.5 years ago

ATpoint 89k

Exact duplications?

sort -k1,1 -k2,2n -k3,3n -k4,4 -k5,5n -k6,6n -u

ADD COMMENT • link 5.5 years ago by ATpoint 89k