Hey everybody I'm trying to implement a Matlab code (though there is a built in function) to do simple alignment for two DNA sequences. if anyone have an Idea help needed.
Thanks a lot in advance
Help in what manner?
as simple as I announced it is just 2 DNA sequences alignment, Im trying to start a student version for such a thing !
also, gapped or ungapped
gapped ... as I saw it does not make a big change in the algorithm cause we will use the scoring tables !
Have you considered looking at Smith-Waterman examples?
Here's an example in python:
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