Dna Pairwise Alignment Using Matlab
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9.5 years ago
HMZ Gheidan ▴ 30

Hey everybody I'm trying to implement a Matlab code (though there is a built in function) to do simple alignment for two DNA sequences. if anyone have an Idea help needed.

Thanks a lot in advance

matlab dna pairwise alignment • 3.7k views
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Help in what manner?

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as simple as I announced it is just 2 DNA sequences alignment, Im trying to start a student version for such a thing !

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also, gapped or ungapped

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gapped ... as I saw it does not make a big change in the algorithm cause we will use the scoring tables !

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9.5 years ago
Gmoney ▴ 220

Have you considered looking at Smith-Waterman examples?

http://en.wikipedia.org/wiki/Smith%E2%80%93Waterman_algorithm

Here's an example in python: http://narnia.cs.ttu.edu/drupal/node/104

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