Question: Merging .gam files
0
gravatar for elizabethmareeross
6 months ago by
elizabethmareeross0 wrote:

Can anyone point me towards a method to merge gam files that are created by using ' vg map ' to map illumina reads to my genome graph? I would like to be able to map all of the sequencing runs separately and then merge the output (something like samtools merge but for a gam) so that I can call SVs for each sample.

Thanks.

gam vg • 231 views
ADD COMMENTlink modified 5 months ago by glenn.hickey160 • written 6 months ago by elizabethmareeross0
2
gravatar for glenn.hickey
5 months ago by
glenn.hickey160
glenn.hickey160 wrote:

GAM files can be combined with cat. Note that vg call can only genotype one sample at a time, though.

ADD COMMENTlink written 5 months ago by glenn.hickey160
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