Hey community, i hope this questiong isn't off topic in here. I have downloaded the Acute Myeloid Leukemia RNA seq raw counts data from TCGA with the TCGAbiolinks package using the followin code
library(TCGAbiolinks) query <- GDCquery(project = "TCGA-LAML", data.category = "Transcriptome Profiling", data.type = "Gene Expression Quantification", workflow.type = "HTSeq - Counts", sample.type = "Primary Blood Derived Cancer - Peripheral Blood")
Followed by the download and prepare functions. However, I don't understand how to retrieve the same type of data from healthy blood to use it as a control for DEG analysis. If I run the same script with sample.type = "Blood Derived Normal" i get an error message stating there is no result matching my query. Anyone can help me out?
Thanks in advance!