How can deleted specific sequences of alignment file without change to the sequences aligned?
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17 months ago
algas2006 • 0

How can deleted specific sequences of alignment file without change to the sequences aligned?

I have a alignment file (from clustal omega) with much sequences. The alignments are very good, but I need to deleted some specific sequences (for name) without changer the alignment.

Thanks for your time

Algas2006

alignment sequence R • 251 views
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17 months ago
Xiang Li • 0

If your sequences are not so many, maybe you can use Mega to delete those sequences. If there are over hundreds of sequences, maybe you can write a python script to solve it. From my opinion, I will list a file of seq names(.txt or .xlsx), then you can use regular expression to match those sequences and delete them. Hope can help you.

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