Question: how to assign annotated gene structure (from contigs) to chromosome coordinate(from HiC)?
gravatar for ward200w
9 weeks ago by
ward200w0 wrote:

Dear All: I'm a beginner of genome biology. I have assembly(de novo) a animal gemome which consists of contigs using nanopore sequencing tech. and I already annotated the gene structure(GFF file and fasta of contigs).Then ,in order to get a better assembly for chromosome-level research.I got a Hi-C squencing I have the chromosome fasta file.But I don't know how to assign gene structure(gene\CDS\mRNA) to the Hi-C results.could you give me some advice or some software helpful?Thanks !

alignment gene genome • 92 views
ADD COMMENTlink written 9 weeks ago by ward200w0
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1555 users visited in the last hour