I have a problem with my
.assoc file that is created after :
./plink --noweb --ped ../OUTPUT.cases.ped --map ../OUTPUT.cases.map --maf 0.05 --assoc --out Qcases .
When i open the Qcases.assoc file , the columns F_A , F_U , CHISQ , P , OR has value
NA but it was supposed to have a number (as if i run the same command for the default test that PLINK has it calculate all values above).. I've searched for more arguments but I cannot find anything. Any Help?