annotation parameter in ChIPQC
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Entering edit mode
16 months ago
chaudharyc61 ▴ 50

Hey everyone

I am trying to take another txDB object as annotation in ChIPQC function, but the function is creating an issue.

Error in getAnnotation(annotation, AllChr = chromosomes) : Unsupported annotation:TAIR10

This is my code

library(ChIPQC)

library(TxDb.Athaliana.BioMart.plantsmart28)

TAIR10 <- TxDb.Athaliana.BioMart.plantsmart28

chipObj <- ChIPQC(samples, annotation="TAIR10")

Can anyone tell, what should be done here ?

Thank you

ChIP-Seq ChIPQC • 529 views
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Entering edit mode
12 weeks ago
384306874 • 0

Hi there ,meeting the same problem when i analyze rhesus monkey chip-seq data, how did you solve?

many thanks

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