Example code of MCMC on somatic variant calling (site specific error model)
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4.1 years ago
CY ▴ 750

Some advanced somatic variant calling algorithms use MCMC (something like High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants). I have already comprehend the statistical logic behind it after some learning process. I still need an example code to get an idea of the actual implementation. However, I can't find a suitable reference code anywhere. Can anyone share some guidance on this. Really appreciated.

Variant calling • 688 views
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