I just downloaded the primary assembly from the GATK bundle along with the dbsnp_146.vcf file (I need it for the BaseRecalibrator function).
I assume, that the vcf file was created based on the primary assembly that I downloaded, given that they are in the same bundle, but I would like to make sure. The vcf file used the GRCh38.p2 version as a reference.
The problem is, that I do not know which version (which patch) this genome is.
So my quesiton is, if there is a way to find out the patch version of a given genome.
Any help is appreciated,