Find out genome version given fasta file
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3.9 years ago
nhaus ▴ 360

Hello everybody,

I just downloaded the primary assembly from the GATK bundle along with the dbsnp_146.vcf file (I need it for the BaseRecalibrator function).

I assume, that the vcf file was created based on the primary assembly that I downloaded, given that they are in the same bundle, but I would like to make sure. The vcf file used the GRCh38.p2 version as a reference.

The problem is, that I do not know which version (which patch) this genome is.

So my quesiton is, if there is a way to find out the patch version of a given genome.

Any help is appreciated,

Thanks!

genome assembly • 636 views
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