Question: Find out genome version given fasta file
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gravatar for nickhir
8 months ago by
nickhir30
nickhir30 wrote:

Hello everybody,

I just downloaded the primary assembly from the GATK bundle along with the dbsnp_146.vcf file (I need it for the BaseRecalibrator function).

I assume, that the vcf file was created based on the primary assembly that I downloaded, given that they are in the same bundle, but I would like to make sure. The vcf file used the GRCh38.p2 version as a reference.

The problem is, that I do not know which version (which patch) this genome is.

So my quesiton is, if there is a way to find out the patch version of a given genome.

Any help is appreciated,

Thanks!

assembly genome • 190 views
ADD COMMENTlink written 8 months ago by nickhir30
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