Haploview Memory Issues
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12.0 years ago
Plantae ▴ 390

I try to use Haploview to contructure LD blocks for my SNP datasets.

My SNP dataset is very large, for each chromosome, ~100000 sites are present.

But I could not calculate LD blocks using HAPLOVIEW, due to out of memory errors,

I have set the memory usage for HAPLOVIEW to 40GB, the computing still fails,

Are there any tools that can be used instead of HAPLOVIEW?

haplotype ld genome • 3.2k views
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