In my RNAseq data, I have identified 60 DEGs which are shared amongst 6 conditions. I have a normalized raw count data of these 60 DEGs. Now I am looking to make heatmap of these 60 DEGs so that I can show differential expression of different genes in these 6 conditions.
After doing literature search, I found I have to convert normalized raw count data to matrix. I am a microbiologist so I don't have great expertise in programming. Can you please let me know which commands i can use in R to prepare the matrix or any other way by which I can prepare the heatmap.
I will really appreciate your kind help Thanks
For some additional graphical options, see: https://github.com/igordot/genomics/blob/master/notes/heatmaps.md