I am new here so please let me know if I am doing anything incorrectly. My question is: How can I visualize the relationship between GO terms using just the GO ID (ex. GO:0008152)? My data does not come from enrichment analysis so I do not have any information about gene expression or p-values. I just have a list of GO IDs. Ideally I would like to use R to visualize this but I am open to anything.
From searching on this site for similar questions, most people had other metadata that programs like REVIGO could use. I was unable to find any suggestions for building graphs using just GO IDs. The AmiGO website (http://amigo.geneontology.org/visualize?mode=client_amigo) does have a web interface that does this, however it breaks with more than 100-200 terms. My data has 300-1000 terms.
Thank you in advance for the help,