Question: Calling SNPs for long-read polyploid species
0
gravatar for liang795
5 months ago by
liang7950
liang7950 wrote:

I have one assembled diploid reference genome in potato and assembled scaffold level polyploid genome in potato, and I want to align both together to call SNP variants. Does anyone have idea which softwares are recommended to do so? Minimap2 seems fine, but there are many called SNPs assigned to multiple chromosomes of reference genome, which is confused to me. Probably this is not the right tool, but is there any tools recommended to do that? Thank you!

ADD COMMENTlink written 5 months ago by liang7950
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1223 users visited in the last hour