Annotation Related after WGBS Data Analysis
0
0
Entering edit mode
4.3 years ago

I am working with WGBS Data. I got a list of differentially methylated CpGs. I have done the annotation. I have downloaded ref file from UCSC and then merged it with my output file, which had coordinates. Now I got list of differentially methylated CpGs with coordinates and identifier (like NM or NR etc)

Now my problem is

1) After doing whole genome analysis, I am getting only a handful of coordinates (~50) which are matching to BED reference file. I have done with hg38 and hg19 both, but more or less same result.

So what can be the reason for that?

next-gen sequencing • 719 views
ADD COMMENT

Login before adding your answer.

Traffic: 1840 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6