How to use kmerind for k-mer counting
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3.8 years ago
hvishwan • 0

I am trying to figure out how to use kmerind. It is supposed to be a library for distributed and multi-core bioinformatics algorithms. The sources are here: https://github.com/ParBLiSS/kmerind

Does anyone have any experience with using kmerind for k-mer counting? The API documentation seems to be very sparse, the only documentation I found was here: https://github.com/ParBLiSS/kmerind/wiki/app-guide. The README says using BUILD_EXAMPLE_APPLICATION as cmake parameter to build example applications, but when i use that, no such example applications are built.

Is there more detailed documentation on kmerind? Or even example applications using the API, especially for k-mer counting? Any help is really appreciated.

kmerind kmer-counting • 446 views
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