Closed:DRIMSeq with technical replicates
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2.4 years ago
poecile.pal ▴ 40

Good afternoon,

I use DRIMSeq-workflow from this page http://bioconductor.org/packages/release/workflows/vignettes/rnaseqDTU/inst/doc/rnaseqDTU.html#statistical-analysis-of-differential-transcript-usage to explore differential transcript usage. Could you please point me out, where and how should I collapse technical replicates in DRIMSeq? For example, for DEG search in DESeq2 I use collapseReplicates function before running DESeq.

Best regards, Poecile palustris

RNA-Seq R rna-seq technical replicates DRIMSeq • 133 views
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