Entering edit mode
3.8 years ago
Hannah Dixon
•
0
Hi,
I am running nags.plot.r on my indexed bam files for ChIP-seq data, however the output graphs are blank or flat and I'm struggling to find the reason why. Here are my commands.
For an individual sample:
ngs.plot.r -G dm6 -R genebody -C /Volumes/T7_Touch/FASTA_ChIP/3_bam/ChIP_polIIcontrol_7.bam -O pol_test
Dor a pair of input and sample:
ngs.plot.r -G dm6 -R genebody -C /Volumes/T7_Touch/FASTA_ChIP/3_bam/ChIP_UPF1_3.bam:/Volumes/T7_Touch/FASTA_ChIP/3_bam/ChIP_input_1.bam -O upf1_test3
Any help is greatly appreciated.
Hannah
Maybe you can try Deeptools to profile the heatmap