Where to find a list of hypermutated regions for hg19 assembly?
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14 months ago
jeni ▴ 50

Hi!

I am performing a variant calling analysis on a set of samples, and I find a lot of mutations located on hypermutated regions of hg assembly, such as HLA regions. These variants have pass the filters related to mapping quality, allele frequency, etc. So, I would like to obtain a track with the coordinates for hypermutated regions in hg19 assembly, with the aim of removing the variants located in there.

I have been looking for it in the genome browser, but I don't find them. Is there any available data that I could use?

Thanks!

variant calling • 288 views
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