How to calculate genotype concordance rate
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14 months ago

Hi, I used beagle for imputation but I could not measures the imputation accuracy in my new imputed vcf file How to compare the imputation accuracy? I see that CR (compliance rate) and R2 are used in the represent for imputation accuracy. What software can be used to calculate CR? thank you!

SNPpenal beagle • 508 views
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