Question: How to calculate genotype concordance rate
gravatar for linyunong126
4 months ago by
linyunong1260 wrote:

Hi, I used beagle for imputation but I could not measures the imputation accuracy in my new imputed vcf file How to compare the imputation accuracy? I see that CR (compliance rate) and R2 are used in the represent for imputation accuracy. What software can be used to calculate CR? thank you!

snppenal beagle • 205 views
ADD COMMENTlink modified 4 months ago • written 4 months ago by linyunong1260
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