Question: Find SNVs that creates GT or AG Splicing
0
gravatar for myname2020
3 months ago by
myname20200
myname20200 wrote:

I have a list of variants and their positions. How can I determine whether it creates a GT or AG change that will cause abnormal splicing?

snp software • 108 views
ADD COMMENTlink modified 3 months ago by colindaven2.4k • written 3 months ago by myname20200
0
gravatar for colindaven
3 months ago by
colindaven2.4k
Hannover Medical School
colindaven2.4k wrote:

Try using snpEff http://snpeff.sourceforge.net/ or Ensembl VEP https://www.ensembl.org/info/docs/tools/vep/index.html

If you have a list, that's not so good. You'll likely need VCF format. Also, check you get the genomic build (coordinates) correct.

ADD COMMENTlink written 3 months ago by colindaven2.4k
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