Hi all. I've recently ran into some trouble using the GSVA package for running ssGSEA (i.e., gsva(data, pathways, method = 'ssGSEA'). Googling a bit revealed a new ssGSEA 2.0 provided by Broad under their Gene Pattern module (see https://github.com/broadinstitute/ssGSEA2.0 and https://gsea-msigdb.github.io/ssGSEA-gpmodule/v10/index.html), and I wonder whether using this new and improved version of ssGSEA will magically resolve my issues.
However, I don't see a ready-made package that I could easily use in RStudio. Does anyone know how to run ssGSEA2.0 / ssGSEA v10 in RStudio? Can I download anything from the GitHub for this purpose?