Question

clusters generated by plotHeatmap of deeptools

0

Entering edit mode

3.7 years ago

hiroaki.tachiwana • 0

Hi,

I am analyzing my ChIP-seq data using deeptools. I got clusters using plotHeatmap and would like to use these clusters for further analysis. How can I get bed files of clusters generated by plotHeatmap’s kmeans option?

ChIP-Seq • 1.2k views

ADD COMMENT • link updated 3.7 years ago by Rashedul Islam ▴ 470 • written 3.7 years ago by hiroaki.tachiwana • 0

score 0 · Answer 1 · 2020-08-06

0

Entering edit mode

3.7 years ago

Rashedul Islam ▴ 470

Please look at the Output Options here. You can use -

--outFileSortedRegions

ADD COMMENT • link 3.7 years ago by Rashedul Islam ▴ 470

0

Entering edit mode

Thank you so much!!

Hiro

ADD REPLY • link 3.7 years ago by hiroaki.tachiwana • 0