Question

A Good Snp Dataset For Gwa Study

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11.9 years ago

alieh ▴ 30

Hi I'm a master student and want to apply machine learning method in GWAS data for my master thesis, but I dont know which data set is appropriate.please tell me about properties of a good data set.

thanks for any input best regards, Alieh

gwas snp dataset • 3.2k views

ADD COMMENT • link updated 11.9 years ago by Jelena Aleksic ▴ 920 • written 11.9 years ago by alieh ▴ 30

score 2 · Answer 1 · 2012-05-28

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11.9 years ago

Arun 2.4k

Here's one for Arabidopsis thaliana, a set of homozygous SNP markers. The 250K SNP dataset and over 100 phenotypes from Atwell et al., Nature 2010

ADD COMMENT • link 11.9 years ago by Arun 2.4k

score 0 · Answer 2 · 2012-05-29

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11.9 years ago

Jelena Aleksic ▴ 920

If you'd like links to some metabolic disease ones, search for 'GWAS' at http://metabolicmine.org - it has a bunch of different studies, sorted by disease. Maybe one of those would be appropriate?

ADD COMMENT • link 11.9 years ago by Jelena Aleksic ▴ 920