Databases for PWMs?
1
0
Entering edit mode
15 months ago
khf0008 • 0

Hi all, This is my first post ever, so if I'm doing something wrong, just politely let me know! I'm trying to get a list of PWMs for 4 transcription factor binding sites in Drosophila. So far, I haven't found much. Below are the databases I've checked so far. Does anyone know of any others that might be helpful? (free ones are preferred, of course).

1) JASPAR 2) Swiss Regulon 3) Transfac 4) HT-Selex 5) Uniprobe

Thanks!

pwm consensus sequence • 275 views
ADD COMMENT
0
Entering edit mode
15 months ago

The only fly-specific ones I know are DMMPMM, OnTheFly, and FlyFactorSurvey..

Other mouse/human ones include the HOCOMOCO, the MEME suite, and Homer databases, all of which have some overlap.

ADD COMMENT

Login before adding your answer.

Traffic: 2098 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6