Running cnvkit with nanopore long read ?
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13 months ago
yeeokkang • 0

Hi,

I try to calculate somatic copy number ratio of my Oxford nanopore long-read data bams. (hg38) Is it okay if I use cnvkit ? As I know, cnvkit is designed for short-read, but I wonder that it is okay to run cnvkit with nanopore long-read data.

Thank you!

  • Yeeok Kang -
cnvkit longread • 269 views
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