Running cnvkit with nanopore long read ?

Question

[yeeokkang]

Hi,

I try to calculate somatic copy number ratio of my Oxford nanopore long-read data bams. (hg38) Is it okay if I use cnvkit ? As I know, cnvkit is designed for short-read, but I wonder that it is okay to run cnvkit with nanopore long-read data.

Thank you!

• Yeeok Kang -