Question

is there any way to filter NCBI datasets by sample type?

1

Entering edit mode

5.0 years ago

tyasird ▴ 10

Hi,

I analyse micro array datasets to get gene expression data.

I want to filter NCBI datasets by sample type.

For example I want to get only tumor/cancer sample in GSE19826.

I look at all the samples one by one and select them manually.

Is there any simple way or tool to get it or I have to look manually?

enter image description here

gene gene expression R python • 983 views

ADD COMMENT • link updated 5.0 years ago by Pierre Lindenbaum 166k • written 5.0 years ago by tyasird ▴ 10

score 4 · Accepted Answer · 2020-09-10

4

Entering edit mode

5.0 years ago

Pierre Lindenbaum 166k

a simple XSLT generating a shell script from the Sample names:

ADD COMMENT • link 5.0 years ago by Pierre Lindenbaum 166k